Sandbox
21 repos for bio · CodingClear
BioTender-max/
awesome-bio-agent-skills

A curated collection of AI agent skills for biomedical research, covering genomics, proteomics, single-cell analysis, clinical AI, and protein design.

176
jaechang-hits/
SciAgent-Skills

197 bioinformatics & life science skills for Claude Code and AI agents — BixBench 92.0% accuracy. RNA-seq, single-cell, drug discovery, proteomics, and more. Powers OmicsHorizon.

362

Open-source, local-first desktop AI research workbench for scientific computing with Python/R, MCP bioinformatics tools, SSH/WSL/GPU runtimes, and OpenAI/Anthropic models.

1.1k
Augmented-Nature/
PubChem-MCP-Server

A comprehensive Model Context Protocol (MCP) server for accessing the PubChem chemical database. This server provides access to over 110 million chemical compounds with extensive molecular properties, bioassay data, and chemical informatics tools.

47
K-Dense-AI/
scientific-agent-skills

Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 190,000+ scientists worldwide. 165 ready-to-use validated skills plus 100+ scientific databases covering biology, chemistry, medicine, and drug discovery. Compatible with Cursor, Claude Code, Codex, Pi, Antigravity, and the open Agent Skills standard.

44k
FlowElement-xinliuyuansu/
m_flow

A bio-inspired cognitive memory engine — a new paradigm for Graph RAG.

4.5k
pinoox/
neuromesh

The Biomimetic Context Engine & Neural Runtime for AI Coding Assistants

85
KatherLab/
STAMP
KatherLab/STAMPFrameworks & SDKs

Solid Tumor Associative Modeling in Pathology

128
cafferychen777/
ChatSpatial

MCP server for spatial transcriptomics analysis through natural language interfaces.

44
ma-compbio-lab/
SkillFoundry

A framework for discovering, compiling, and validating reusable skills for scientific agents.

39

Write-time code quality enforcement system for Claude Code. Every file edit triggers automated formatting and linting through fast Rust-based linters and dedicated Claude instances that intelligently fix remaining violations

365
cyanheads/
pubmed-mcp-server

Search PubMed/Europe PMC, fetch articles and full text (PMC/EPMC/Unpaywall), citations, MeSH terms via MCP. STDIO or Streamable HTTP.

148
Augmented-Nature/
ChEMBL-MCP-Server

A comprehensive Model Context Protocol (MCP) server providing advanced access to the ChEMBL chemical database.

89

Drop-in scientific plotting skill for Claude Code, Codex, Cursor, and other coding agents.

150

AIPOCH Open-Science is an open-source, local-first, model-agnostic AI research workbench for macOS, Windows, and Linux, with scientific agents, Python/R notebooks, data connectors, and reproducible provenance.

4k

A symbiotic AI agent that remembers everything, challenges you, and extends your cognition.

737
fabio-rovai/
open-ontologies

AI-native ontology engine: a Rust MCP server with tools for building, validating, querying, and reasoning over RDF/OWL ontologies. In-memory Oxigraph triple store, native OWL2-DL tableaux reasoner, SHACL validation, SPARQL, versioning. Single binary, no JVM.

492
Webioinfo01/
aweskill

A CLI-first skill package manager that AI agents can operate themselves.

35