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@adaptyvbio/protein-design-skills
Skills#Claude Code#Research#Coding#Data

Claude Code skills for protein design workflows

This repo packages 24 Claude Code skills for computational protein design tasks. The skills cover the workflow from setup and target selection through design, validation, and QC, so Claude can choose the right path for the job.

158 stars•21 forks•Updated 3mo ago
Who it's for

Builders who use Claude Code for computational protein design and want reusable workflow skills.

What it delivers

You can run protein design tasks with the right skill sequence instead of rebuilding the workflow each time.

What it does

Skill pack for protein design

Provides 24 Claude Code skills for common protein design tasks and subworkflows.

Workflow coverage

Includes skills for binder design, RFdiffusion, ProteinMPNN, Chai, Boltz, AlphaFold, Foldseek, UniProt, and QC steps.

Shared skill pieces

Uses `skills/_shared` for common instructions and building blocks across the skill set.

Getting started and pipeline docs

Explains setup, tool selection, the standard pipeline, compute setup, and troubleshooting in `docs/`.

Plugin install path

Ships with `.claude-plugin/marketplace.json` and `plugin-manifest.json` for Claude Code plugin installation.

How to get it

  1. 1Run
    /plugin marketplace add adaptyvbio/protein-design-skills
/plugin install adaptyv@protein-design-skills

README

Protein Design Skills

24 Claude Code skills for computational protein design

Getting started • Skills • Pipeline

Install

/plugin marketplace add adaptyvbio/protein-design-skills
/plugin install adaptyv@protein-design-skills

Setup (first time)

Setup steps

→ Getting started

Skills

Skill categories

→ View all 24 skills

Pipeline

Pipeline flow

→ Standard pipeline

Quick start

"Design a binder for PDB 1ALU"

Claude will pick the right skills for the target (for example BoltzGen → Chai → QC, or RFdiffusion → ProteinMPNN → Chai → QC).

Links

Contributing

Creating a new skill

The easiest way to create a new skill is with Claude Code:

/skill skill-creator

This uses Anthropic's skill-creator to guide you through the process.

See CONTRIBUTING.md for detailed guidelines.

License

MIT

References

Files in the repo

Repository payload•11 top-level entries
  • .claude-plugin
  • .github
  • assets
  • docs
  • skills
  • .gitignore
  • CHANGELOG.md
  • CONTRIBUTING.md
  • LICENSE
  • plugin-manifest.json
  • README.md

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