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14 repos for science · Claude Code · CodingClear

Open-source, local-first desktop AI research workbench for scientific computing with Python/R, MCP bioinformatics tools, SSH/WSL/GPU runtimes, and OpenAI/Anthropic models.

1.1k
HeshamFS/
materials-simulation-skills

Agent Skills for computational materials science -- numerical stability, solvers, meshing, convergence, and simulation workflows.

66
ai4s-research/
ai4s-skills

Open-source agent skills for AI for Science: topic exploration, literature survey, experiments, paper writing, and integrity audit — driven by any coding agent.

222
awslabs/
hcls-agent-skills

Agent skills for healthcare and life sciences: genomics, imaging, claims, drug discovery, and more. Works with Amazon Quick, Kiro, Amazon AgentCore, AWS Strands SDK, Claude Code, Codex, and any Agent Skills-compatible platform.

32
jaechang-hits/
SciAgent-Skills

197 bioinformatics & life science skills for Claude Code and AI agents — BixBench 92.0% accuracy. RNA-seq, single-cell, drug discovery, proteomics, and more. Powers OmicsHorizon.

362
K-Dense-AI/
scientific-agent-skills

Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 190,000+ scientists worldwide. 165 ready-to-use validated skills plus 100+ scientific databases covering biology, chemistry, medicine, and drug discovery. Compatible with Cursor, Claude Code, Codex, Pi, Antigravity, and the open Agent Skills standard.

44k
patsnap/
patent-literature-search-mcp

Search global patents across WIPO, EPO, USPTO, CNIPA, JPO, KIPO and other authorities, together with scientific literature from PubMed, arXiv, Nature, Science and other major sources using natural-language, semantic, keyword and structured search.

79
nagisanzenin/
engram

Evidence-based learning engine — first-principles curricula, free-recall verification with receipts, FSRS-scheduled memory, and explorable artifacts. Learn anything; keep it.

1.4k

Drop-in scientific plotting skill for Claude Code, Codex, Cursor, and other coding agents.

150
ashuiGordon/
stata-cli

Agent-native Stata CLI for AI coding agents (Codex, Claude Code, Cursor). Run .do files, inspect data, and return econometric results as JSON via PyStata.

56

Vestige enhances agents by deterministic root-cause retrieval that reaches backward through time to find the quiet change, decision, or service that caused today’s failure, not the lookalike.

617
shepsci/
kaggle-skill

Complete Kaggle integration plugin/skill for AI coding agents — competition reports, dataset/model downloads, notebook execution, and badge collection. Works with Claude Code, Gemini CLI, Cursor, Codex, OpenClaw, and 35+ agents via skills.sh.

86
cdeust/
Cortex
cdeust/CortexConnectors

Cross-platform persistent memory MCP for Codex, Gemini CLI, Claude Code, and other local MCP hosts. 36 cited neuroscience mechanisms, local-first SQLite/PostgreSQL, hybrid retrieval, decay-based consolidation, and reproducible benchmarks. Claude adds optional automatic lifecycle hooks.

72