BioMCP: Biomedical Model Context Protocol
A curated collection of AI agent skills for biomedical research, covering genomics, proteomics, single-cell analysis, clinical AI, and protein design.
197 bioinformatics & life science skills for Claude Code and AI agents — BixBench 92.0% accuracy. RNA-seq, single-cell, drug discovery, proteomics, and more. Powers OmicsHorizon.
Open-source, local-first desktop AI research workbench for scientific computing with Python/R, MCP bioinformatics tools, SSH/WSL/GPU runtimes, and OpenAI/Anthropic models.
A bio-inspired cognitive memory engine — a new paradigm for Graph RAG.
MCP server for spatial transcriptomics analysis through natural language interfaces.
Drop-in scientific plotting skill for Claude Code, Codex, Cursor, and other coding agents.
Search ClinicalTrials.gov trials, retrieve study details and results, and match patients to eligible trials via MCP. STDIO or Streamable HTTP.
AI-native ontology engine: a Rust MCP server with tools for building, validating, querying, and reasoning over RDF/OWL ontologies. In-memory Oxigraph triple store, native OWL2-DL tableaux reasoner, SHACL validation, SPARQL, versioning. Single binary, no JVM.
Claude Code skills for protein design