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8 repos for bioinformatics · Any agentClear

Open-source, local-first desktop AI research workbench for scientific computing with Python/R, MCP bioinformatics tools, SSH/WSL/GPU runtimes, and OpenAI/Anthropic models.

1.1k
KatherLab/
STAMP
KatherLab/STAMPFrameworks & SDKs

Solid Tumor Associative Modeling in Pathology

128
cafferychen777/
ChatSpatial

MCP server for spatial transcriptomics analysis through natural language interfaces.

44

Drop-in scientific plotting skill for Claude Code, Codex, Cursor, and other coding agents.

150
cyanheads/
pubmed-mcp-server

Search PubMed/Europe PMC, fetch articles and full text (PMC/EPMC/Unpaywall), citations, MeSH terms via MCP. STDIO or Streamable HTTP.

148
BioTender-max/
awesome-bio-agent-skills

A curated collection of AI agent skills for biomedical research, covering genomics, proteomics, single-cell analysis, clinical AI, and protein design.

176

AIPOCH Open-Science is an open-source, local-first, model-agnostic AI research workbench for macOS, Windows, and Linux, with scientific agents, Python/R notebooks, data connectors, and reproducible provenance.

4k