Sandbox
10 repos for bioinformatics · CodingClear
jaechang-hits/
SciAgent-Skills

197 bioinformatics & life science skills for Claude Code and AI agents — BixBench 92.0% accuracy. RNA-seq, single-cell, drug discovery, proteomics, and more. Powers OmicsHorizon.

362

Open-source, local-first desktop AI research workbench for scientific computing with Python/R, MCP bioinformatics tools, SSH/WSL/GPU runtimes, and OpenAI/Anthropic models.

1.1k
KatherLab/
STAMP
KatherLab/STAMPFrameworks & SDKs

Solid Tumor Associative Modeling in Pathology

128
cafferychen777/
ChatSpatial

MCP server for spatial transcriptomics analysis through natural language interfaces.

44

Drop-in scientific plotting skill for Claude Code, Codex, Cursor, and other coding agents.

150
cyanheads/
pubmed-mcp-server

Search PubMed/Europe PMC, fetch articles and full text (PMC/EPMC/Unpaywall), citations, MeSH terms via MCP. STDIO or Streamable HTTP.

148
BioTender-max/
awesome-bio-agent-skills

A curated collection of AI agent skills for biomedical research, covering genomics, proteomics, single-cell analysis, clinical AI, and protein design.

176

AIPOCH Open-Science is an open-source, local-first, model-agnostic AI research workbench for macOS, Windows, and Linux, with scientific agents, Python/R notebooks, data connectors, and reproducible provenance.

4k
K-Dense-AI/
scientific-agent-skills

Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 190,000+ scientists worldwide. 165 ready-to-use validated skills plus 100+ scientific databases covering biology, chemistry, medicine, and drug discovery. Compatible with Cursor, Claude Code, Codex, Pi, Antigravity, and the open Agent Skills standard.

44k